HL_4V6S_055
3D structure
- PDB id
- 4V6S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.1 Å
Loop
- Sequence
- CUAAAGAGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 4V6S|1|AB|A|2268, 4V6S|1|AB|C|2275
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6S_055 not in the Motif Atlas
- Homologous match to HL_5J7L_187
- Geometric discrepancy: 0.3242
- The information below is about HL_5J7L_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91939.2
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
4V6S|1|AB|C|2264
4V6S|1|AB|U|2265
4V6S|1|AB|A|2266
4V6S|1|AB|A|2267
4V6S|1|AB|A|2268
4V6S|1|AB|G|2269
4V6S|1|AB|A|2270
4V6S|1|AB|G|2271
4V6S|1|AB|U|2272
4V6S|1|AB|A|2273
4V6S|1|AB|A|2274
4V6S|1|AB|C|2275
4V6S|1|AB|G|2276
Current chains
- Chain AB
- 23S ribomosomal RNA
Nearby chains
- Chain A1
- 50S ribosomal protein L30
- Chain AA
- 5S ribosomal RNA; 5S rRNA
- Chain AO
- 50S ribosomal protein L16
- Chain AY
- 50S ribosomal protein L27
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