HL_4V6S_063

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

4V6S|1|AB|U|2555

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6S_063 not in the Motif Atlas

Homologous match to HL_7A0S_061

Geometric discrepancy: 0.5363

The information below is about HL_7A0S_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

4V6S|1|AB|C|2551
4V6S|1|AB|OMU|2552
4V6S|1|AB|G|2553
4V6S|1|AB|U|2554
4V6S|1|AB|U|2555
4V6S|1|AB|C|2556
4V6S|1|AB|G|2557

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain AM

50S ribosomal protein L14