HL_4V6S_087
3D structure
- PDB id
- 4V6S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.1 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 4V6S|1|BA|A|790
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6S_087 not in the Motif Atlas
- Geometric match to HL_8KAH_003
- Geometric discrepancy: 0.3656
- The information below is about HL_8KAH_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89457.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V6S|1|BA|G|786
4V6S|1|BA|A|787
4V6S|1|BA|U|788
4V6S|1|BA|U|789
4V6S|1|BA|A|790
4V6S|1|BA|G|791
4V6S|1|BA|A|792
4V6S|1|BA|U|793
4V6S|1|BA|A|794
4V6S|1|BA|C|795
4V6S|1|BA|C|796
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain AB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BB
- mRNA
- Chain BC
- Transfer RNA; tRNA
- Chain BM
- 30S ribosomal protein S11
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