HL_4V6S_099
3D structure
- PDB id
- 4V6S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.1 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- 4V6S|1|BA|C|1317, 4V6S|1|BA|A|1318
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6S_099 not in the Motif Atlas
- Homologous match to HL_5J7L_028
- Geometric discrepancy: 0.4983
- The information below is about HL_5J7L_028
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.3
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V6S|1|BA|C|1314
4V6S|1|BA|U|1315
4V6S|1|BA|G|1316
4V6S|1|BA|C|1317
4V6S|1|BA|A|1318
4V6S|1|BA|A|1319
4V6S|1|BA|C|1320
4V6S|1|BA|U|1321
4V6S|1|BA|C|1322
4V6S|1|BA|G|1323
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain A2
- 50S ribosomal protein L31
- Chain BO
- 30S ribosomal protein S13
- Chain BP
- 30S ribosomal protein S14
- Chain BU
- 30S ribosomal protein S19
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