HL_4V6T_008
3D structure
- PDB id
- 4V6T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.3 Å
Loop
- Sequence
- AACUGAGACACGGU
- Length
- 14 nucleotides
- Bulged bases
- 4V6T|1|AA|C|330, 4V6T|1|AA|G|331
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6T_008 not in the Motif Atlas
- Homologous match to HL_5J7L_008
- Geometric discrepancy: 0.159
- The information below is about HL_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81205.3
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V6T|1|AA|A|320
4V6T|1|AA|A|321
4V6T|1|AA|C|322
4V6T|1|AA|U|323
4V6T|1|AA|G|324
4V6T|1|AA|A|325
4V6T|1|AA|G|326
4V6T|1|AA|A|327
4V6T|1|AA|C|328
4V6T|1|AA|A|329
4V6T|1|AA|C|330
4V6T|1|AA|G|331
4V6T|1|AA|G|332
4V6T|1|AA|U|333
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AP
- 30S ribosomal protein S16
- Chain AT
- 30S ribosomal protein S20
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