HL_4V6T_008

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

4V6T|1|AA|C|330, 4V6T|1|AA|G|331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6T_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.159

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V6T|1|AA|A|320
4V6T|1|AA|A|321
4V6T|1|AA|C|322
4V6T|1|AA|U|323
4V6T|1|AA|G|324
4V6T|1|AA|A|325
4V6T|1|AA|G|326
4V6T|1|AA|A|327
4V6T|1|AA|C|328
4V6T|1|AA|A|329
4V6T|1|AA|C|330
4V6T|1|AA|G|331
4V6T|1|AA|G|332
4V6T|1|AA|U|333

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AT

30S ribosomal protein S20