HL_4V6T_038
3D structure
- PDB id
- 4V6T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.3 Å
Loop
- Sequence
- G(5MU)(PSU)CAAC(PSU)C
- Length
- 9 nucleotides
- Bulged bases
- 4V6T|1|AV|C|346
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6T_038 not in the Motif Atlas
- Homologous match to HL_4V8Q_110
- Geometric discrepancy: 0.3773
- The information below is about HL_4V8Q_110
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
4V6T|1|AV|G|340
4V6T|1|AV|5MU|341
4V6T|1|AV|PSU|342
4V6T|1|AV|C|343
4V6T|1|AV|A|344
4V6T|1|AV|A|345
4V6T|1|AV|C|346
4V6T|1|AV|PSU|347
4V6T|1|AV|C|348
Current chains
- Chain AV
- full length transfer messenger RNA (tmRNA)
Nearby chains
- Chain AW
- SsrA-binding protein
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BF
- 50S ribosomal protein L5
- Chain BM
- 50S ribosomal protein L16
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