HL_4V6T_039

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

4V6T|1|AX|G|19, 4V6T|1|AX|G|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6T_039 not in the Motif Atlas

Homologous match to HL_4V90_032

Geometric discrepancy: 0.1716

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

4V6T|1|AX|C|13
4V6T|1|AX|A|14
4V6T|1|AX|G|15
4V6T|1|AX|C|16
4V6T|1|AX|C|17
4V6T|1|AX|U|18
4V6T|1|AX|G|19
4V6T|1|AX|G|20
4V6T|1|AX|U|21
4V6T|1|AX|A|22
4V6T|1|AX|G|23

Current chains

Chain AX

formyl-methionine specific initiator transfer RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA