HL_4V6T_040

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

GCUCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6T_040 not in the Motif Atlas

Homologous match to HL_6UFM_002

Geometric discrepancy: 0.2195

The information below is about HL_6UFM_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.6

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

4V6T|1|AX|G|32
4V6T|1|AX|C|33
4V6T|1|AX|U|34
4V6T|1|AX|C|35
4V6T|1|AX|A|36
4V6T|1|AX|U|37
4V6T|1|AX|A|38
4V6T|1|AX|A|39
4V6T|1|AX|C|40

Current chains

Chain AX

formyl-methionine specific initiator transfer RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AI

30S ribosomal protein S9

Chain AW

SsrA-binding protein