HL_4V6T_041

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

CGGUUCAAAUCCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6T_041 not in the Motif Atlas

Geometric match to HL_5EL4_250

Geometric discrepancy: 0.3866

The information below is about HL_5EL4_250

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25222.2

Basepair signature

cWW-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4V6T|1|AX|C|52
4V6T|1|AX|G|53
4V6T|1|AX|G|54
4V6T|1|AX|U|55
4V6T|1|AX|U|56
4V6T|1|AX|C|57
4V6T|1|AX|A|58
4V6T|1|AX|A|59
4V6T|1|AX|A|60
4V6T|1|AX|U|61
4V6T|1|AX|C|62
4V6T|1|AX|C|63
4V6T|1|AX|G|64

Current chains

Chain AX

formyl-methionine specific initiator transfer RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA