HL_4V6T_056

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

4V6T|1|BA|C|490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6T_056 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.066

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V6T|1|BA|C|487
4V6T|1|BA|G|488
4V6T|1|BA|G|489
4V6T|1|BA|C|490
4V6T|1|BA|G|491
4V6T|1|BA|A|492
4V6T|1|BA|G|493

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L22