HL_4V6T_057

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

4V6T|1|BA|U|546, 4V6T|1|BA|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6T_057 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.3509

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4V6T|1|BA|G|543
4V6T|1|BA|C|544
4V6T|1|BA|U|545
4V6T|1|BA|U|546
4V6T|1|BA|A|547
4V6T|1|BA|G|548
4V6T|1|BA|G|549
4V6T|1|BA|C|550

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L13

Chain BR

50S ribosomal protein L21