HL_4V6T_096

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

UGGUCGGACAUCA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6T_096 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.3995

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

4V6T|1|BA|U|2302
4V6T|1|BA|G|2303
4V6T|1|BA|G|2304
4V6T|1|BA|U|2305
4V6T|1|BA|C|2306
4V6T|1|BA|G|2307
4V6T|1|BA|G|2308
4V6T|1|BA|A|2309
4V6T|1|BA|C|2310
4V6T|1|BA|A|2311
4V6T|1|BA|U|2312
4V6T|1|BA|C|2313
4V6T|1|BA|A|2314

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AV

Transfer-messenger RNA; tmRNA

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BF

50S ribosomal protein L5