3D structure

PDB id
4V6T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
Experimental method
ELECTRON MICROSCOPY
Resolution
8.3 Å

Loop

Sequence
CGAGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V6T_105 not in the Motif Atlas
Geometric match to HL_5J7L_197
Geometric discrepancy: 0.0945
The information below is about HL_5J7L_197
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

4V6T|1|BA|C|2658
4V6T|1|BA|G|2659
4V6T|1|BA|A|2660
4V6T|1|BA|G|2661
4V6T|1|BA|A|2662
4V6T|1|BA|G|2663

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain AY
elongation factor G
Chain BG
50S ribosomal protein L6

Coloring options:


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