HL_4V6T_124

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

UCCGCUCUUA

Length

10 nucleotides

Bulged bases

4V6T|1|AV|C|154, 4V6T|1|AV|C|155

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6T_124 not in the Motif Atlas

Geometric match to HL_8P9A_121

Geometric discrepancy: 0.3721

The information below is about HL_8P9A_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77600.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4V6T|1|AV|U|153
4V6T|1|AV|C|154
4V6T|1|AV|C|155
4V6T|1|AV|G|156
4V6T|1|AV|C|157
4V6T|1|AV|U|158
4V6T|1|AV|C|159
4V6T|1|AV|U|160
4V6T|1|AV|U|161
4V6T|1|AV|A|162

Current chains

Chain AV

full length transfer messenger RNA (tmRNA)

Nearby chains