HL_4V6V_003
3D structure
- PDB id
- 4V6V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Tetracycline resistance protein Tet(O) bound to the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- G(OMC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 4V6V|1|A3|U|34
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6V_003 not in the Motif Atlas
- Homologous match to HL_6UFG_007
- Geometric discrepancy: 0.2427
- The information below is about HL_6UFG_007
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
4V6V|1|A3|G|32
4V6V|1|A3|OMC|33
4V6V|1|A3|U|34
4V6V|1|A3|C|35
4V6V|1|A3|A|36
4V6V|1|A3|U|37
4V6V|1|A3|A|38
4V6V|1|A3|A|39
4V6V|1|A3|C|40
Current chains
- Chain A3
- P-tRNA
Nearby chains
- Chain A1
- Tetracycline resistance protein TetO
- Chain A2
- mRNA
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AI
- 30S ribosomal protein S9
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
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