HL_4V6V_021

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6V_021 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.4875

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V6V|1|AA|G|786
4V6V|1|AA|A|787
4V6V|1|AA|U|788
4V6V|1|AA|U|789
4V6V|1|AA|A|790
4V6V|1|AA|G|791
4V6V|1|AA|A|792
4V6V|1|AA|U|793
4V6V|1|AA|A|794
4V6V|1|AA|C|795
4V6V|1|AA|C|796

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain A2

mRNA

Chain A3

Transfer RNA; tRNA

Chain AK

30S ribosomal protein S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA