3D structure

PDB id
4V6V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracycline resistance protein Tet(O) bound to the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
9.8 Å

Loop

Sequence
UGUGAA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V6V_028 not in the Motif Atlas
Homologous match to HL_5J7L_023
Geometric discrepancy: 0.1727
The information below is about HL_5J7L_023
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

4V6V|1|AA|U|1076
4V6V|1|AA|G|1077
4V6V|1|AA|U|1078
4V6V|1|AA|G|1079
4V6V|1|AA|A|1080
4V6V|1|AA|A|1081

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AB
30S ribosomal protein S2
Chain AE
30S ribosomal protein S5

Coloring options:


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