HL_4V6V_040

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6V_040 not in the Motif Atlas

Geometric match to HL_2IZN_001

Geometric discrepancy: 0.3587

The information below is about HL_2IZN_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

4V6V|1|BA|U|137
4V6V|1|BA|U|138
4V6V|1|BA|U|139
4V6V|1|BA|C|140
4V6V|1|BA|G|141
4V6V|1|BA|A|142

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BX

50S ribosomal protein L23