HL_4V6V_084

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

4V6V|1|BA|A|1913, 4V6V|1|BA|C|1914, 4V6V|1|BA|A|1916

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6V_084 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.2716

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

4V6V|1|BA|G|1910
4V6V|1|BA|PSU|1911
4V6V|1|BA|A|1912
4V6V|1|BA|A|1913
4V6V|1|BA|C|1914
4V6V|1|BA|3TD|1915
4V6V|1|BA|A|1916
4V6V|1|BA|PSU|1917
4V6V|1|BA|A|1918
4V6V|1|BA|A|1919
4V6V|1|BA|C|1920

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain A1

Tetracycline resistance protein TetO

Chain A3

Transfer RNA; tRNA

Chain AA

Small subunit ribosomal RNA; SSU rRNA