HL_4V6V_100

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

4V6V|1|BA|A|2662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6V_100 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2702

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V6V|1|BA|C|2658
4V6V|1|BA|G|2659
4V6V|1|BA|A|2660
4V6V|1|BA|G|2661
4V6V|1|BA|A|2662
4V6V|1|BA|G|2663

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain A1

Tetracycline resistance protein TetO

Chain BH

50S ribosomal protein L6