HL_4V6V_106

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CAUGCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6V_106 not in the Motif Atlas

Geometric match to HL_1MJI_002

Geometric discrepancy: 0.1629

The information below is about HL_1MJI_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47787.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4V6V|1|Ba|C|38
4V6V|1|Ba|A|39
4V6V|1|Ba|U|40
4V6V|1|Ba|G|41
4V6V|1|Ba|C|42
4V6V|1|Ba|C|43
4V6V|1|Ba|G|44

Current chains

Chain Ba

5S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L31

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BG

50S ribosomal protein L5

Chain BS

50S ribosomal protein L18