HL_4V6V_110
3D structure
- PDB id
- 4V6V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Tetracycline resistance protein Tet(O) bound to the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- ACCCCAUGCCGAACU
- Length
- 15 nucleotides
- Bulged bases
- 4V6V|1|Ba|C|35, 4V6V|1|Ba|G|41
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6V_110 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.2893
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V6V|1|Ba|A|34
4V6V|1|Ba|C|35
4V6V|1|Ba|C|36
4V6V|1|Ba|C|37
4V6V|1|Ba|C|38
4V6V|1|Ba|A|39
4V6V|1|Ba|U|40
4V6V|1|Ba|G|41
4V6V|1|Ba|C|42
4V6V|1|Ba|C|43
4V6V|1|Ba|G|44
4V6V|1|Ba|A|45
4V6V|1|Ba|A|46
4V6V|1|Ba|C|47
4V6V|1|Ba|U|48
Current chains
- Chain Ba
- 5S ribosomal RNA
Nearby chains
- Chain B4
- 50S ribosomal protein L31
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BG
- 50S ribosomal protein L5
- Chain BS
- 50S ribosomal protein L18
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