HL_4V6X_006

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGUGG

Length

5 nucleotides

Bulged bases

4V6X|1|A5|U|224, 4V6X|1|A5|G|225

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_006 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.1462

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V6X|1|A5|C|222
4V6X|1|A5|G|223
4V6X|1|A5|U|224
4V6X|1|A5|G|225
4V6X|1|A5|G|226

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CY

60S ribosomal protein L26