HL_4V6X_007

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

4V6X|1|A5|G|232, 4V6X|1|A5|U|233, 4V6X|1|A5|G|234

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_007 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.1686

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

4V6X|1|A5|G|230
4V6X|1|A5|U|231
4V6X|1|A5|G|232
4V6X|1|A5|U|233
4V6X|1|A5|G|234
4V6X|1|A5|A|235
4V6X|1|A5|G|236
4V6X|1|A5|G|237
4V6X|1|A5|C|238

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain A8

5.8S ribosomal RNA; 5.8S rRNA

Chain CC

60S ribosomal protein L4

Chain CY

60S ribosomal protein L26