HL_4V6X_016

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

4V6X|1|A5|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_016 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.16

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4V6X|1|A5|U|1317
4V6X|1|A5|C|1318
4V6X|1|A5|U|1319
4V6X|1|A5|U|1320
4V6X|1|A5|G|1321
4V6X|1|A5|A|1322
4V6X|1|A5|A|1323
4V6X|1|A5|A|1324
4V6X|1|A5|C|1325
4V6X|1|A5|A|1326

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain Ca

60S ribosomal protein L27a

Chain Ce

60S ribosomal protein L32