HL_4V6X_019

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GCGCUC

Length

6 nucleotides

Bulged bases

4V6X|1|A5|U|1410

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_019 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3646

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V6X|1|A5|G|1406
4V6X|1|A5|C|1407
4V6X|1|A5|G|1408
4V6X|1|A5|C|1409
4V6X|1|A5|U|1410
4V6X|1|A5|C|1411

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain Cb

60S ribosomal protein L29