HL_4V6X_022

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_022 not in the Motif Atlas

Homologous match to HL_8C3A_019

Geometric discrepancy: 0.1273

The information below is about HL_8C3A_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V6X|1|A5|G|1561
4V6X|1|A5|G|1562
4V6X|1|A5|A|1563
4V6X|1|A5|A|1564
4V6X|1|A5|A|1565
4V6X|1|A5|C|1566

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain AL

40S ribosomal protein S11

Chain AN

40S ribosomal protein S13

Chain B2

Small subunit ribosomal RNA; SSU rRNA