HL_4V6X_024

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

4V6X|1|A5|A|1630

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_024 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.2416

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

4V6X|1|A5|G|1627
4V6X|1|A5|C|1628
4V6X|1|A5|G|1629
4V6X|1|A5|A|1630
4V6X|1|A5|A|1631
4V6X|1|A5|A|1632
4V6X|1|A5|G|1633
4V6X|1|A5|A|1634
4V6X|1|A5|C|1635

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CA

60S ribosomal protein L8

Chain Cj

60S ribosomal protein L37