HL_4V6X_025

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

4V6X|1|A5|C|1676, 4V6X|1|A5|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_025 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.1289

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V6X|1|A5|C|1675
4V6X|1|A5|C|1676
4V6X|1|A5|U|1677
4V6X|1|A5|C|1678
4V6X|1|A5|A|1679
4V6X|1|A5|G|1680

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain Ca

60S ribosomal protein L27a

Chain Cb

60S ribosomal protein L29

Chain Co

60S ribosomal protein L36a