HL_4V6X_041

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_041 not in the Motif Atlas

Homologous match to HL_8C3A_038

Geometric discrepancy: 0.2673

The information below is about HL_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4V6X|1|A5|G|2664
4V6X|1|A5|U|2665
4V6X|1|A5|U|2666
4V6X|1|A5|C|2667
4V6X|1|A5|G|2668
4V6X|1|A5|C|2669
4V6X|1|A5|C|2670

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CR

60S ribosomal protein L19

Chain Cp

60S ribosomal protein L37a