HL_4V6X_052

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

4V6X|1|A5|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_052 not in the Motif Atlas

Homologous match to HL_5TBW_050

Geometric discrepancy: 0.1302

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

4V6X|1|A5|U|3796
4V6X|1|A5|C|3797
4V6X|1|A5|U|3798
4V6X|1|A5|A|3799
4V6X|1|A5|A|3800
4V6X|1|A5|U|3801
4V6X|1|A5|U|3802
4V6X|1|A5|A|3803
4V6X|1|A5|G|3804

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain CV

60S ribosomal protein L23