HL_4V6X_056

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

ACUGGGGCGGU

Length

11 nucleotides

Bulged bases

4V6X|1|A5|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_056 not in the Motif Atlas

Geometric match to HL_4V83_139

Geometric discrepancy: 0.3969

The information below is about HL_4V83_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53597.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

4V6X|1|A5|A|4192
4V6X|1|A5|C|4193
4V6X|1|A5|U|4194
4V6X|1|A5|G|4195
4V6X|1|A5|G|4196
4V6X|1|A5|G|4197
4V6X|1|A5|G|4198
4V6X|1|A5|C|4199
4V6X|1|A5|G|4200
4V6X|1|A5|G|4201
4V6X|1|A5|U|4202

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CI

60S ribosomal protein L10-like

Chain Cb

60S ribosomal protein L29