HL_4V6X_063

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_063 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.2246

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V6X|1|A5|C|4417
4V6X|1|A5|G|4418
4V6X|1|A5|U|4419
4V6X|1|A5|U|4420
4V6X|1|A5|C|4421
4V6X|1|A5|A|4422
4V6X|1|A5|U|4423
4V6X|1|A5|A|4424
4V6X|1|A5|G|4425

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain Az

Elongation factor 2

Chain CI

60S ribosomal protein L10-like

Chain Cm

60S ribosomal protein L40