HL_4V6X_075
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CAGCUAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6X_075 not in the Motif Atlas
- Geometric match to HL_4V9F_001
- Geometric discrepancy: 0.2441
- The information below is about HL_4V9F_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
4V6X|1|A8|C|47
4V6X|1|A8|A|48
4V6X|1|A8|G|49
4V6X|1|A8|C|50
4V6X|1|A8|U|51
4V6X|1|A8|A|52
4V6X|1|A8|G|53
4V6X|1|A8|C|54
4V6X|1|A8|U|55
4V6X|1|A8|G|56
Current chains
- Chain A8
- 5.8S ribosomal RNA
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain CX
- 60S ribosomal protein L23a
- Chain Ch
- 60S ribosomal protein L35
- Chain Cj
- 60S ribosomal protein L37
- Chain Cl
- 60S ribosomal protein L39
Coloring options: