HL_4V6X_085

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

4V6X|1|B2|C|324

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_085 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3899

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

4V6X|1|B2|C|322
4V6X|1|B2|C|323
4V6X|1|B2|C|324
4V6X|1|B2|C|325
4V6X|1|B2|C|326
4V6X|1|B2|G|327
4V6X|1|B2|U|328
4V6X|1|B2|G|329

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S6

Chain CW

60S ribosomal protein L24