HL_4V6X_086

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

4V6X|1|B2|G|385

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_086 not in the Motif Atlas

Geometric match to HL_3SKL_006

Geometric discrepancy: 0.3719

The information below is about HL_3SKL_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V6X|1|B2|G|377
4V6X|1|B2|U|378
4V6X|1|B2|C|379
4V6X|1|B2|G|380
4V6X|1|B2|C|381
4V6X|1|B2|C|382
4V6X|1|B2|G|383
4V6X|1|B2|U|384
4V6X|1|B2|G|385
4V6X|1|B2|C|386
4V6X|1|B2|C|387

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AI

40S ribosomal protein S8

Chain AL

40S ribosomal protein S11