HL_4V6X_087

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

4V6X|1|B2|C|417

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_087 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.2563

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4V6X|1|B2|U|416
4V6X|1|B2|C|417
4V6X|1|B2|A|418
4V6X|1|B2|G|419
4V6X|1|B2|G|420
4V6X|1|B2|G|421

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AC

40S ribosomal protein S2

Chain AJ

40S ribosomal protein S9

Chain AL

40S ribosomal protein S11

Chain AW

40S ribosomal protein S15a