HL_4V6X_090

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

4V6X|1|B2|C|502, 4V6X|1|B2|C|503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_090 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.3173

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V6X|1|B2|C|498
4V6X|1|B2|G|499
4V6X|1|B2|A|500
4V6X|1|B2|C|501
4V6X|1|B2|C|502
4V6X|1|B2|C|503
4V6X|1|B2|G|504

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AY

40S ribosomal protein S24