HL_4V6X_109

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_109 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.1729

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V6X|1|B2|C|1565
4V6X|1|B2|G|1566
4V6X|1|B2|G|1567
4V6X|1|B2|C|1568
4V6X|1|B2|A|1569
4V6X|1|B2|G|1570

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AS

40S ribosomal protein S18

Chain AT

40S ribosomal protein S19