HL_4V6X_116

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

4V6X|1|A5|C|1481, 4V6X|1|A5|C|1485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_116 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3565

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V6X|1|A5|G|1479
4V6X|1|A5|C|1480
4V6X|1|A5|C|1481
4V6X|1|A5|G|1482
4V6X|1|A5|C|1483
4V6X|1|A5|G|1484
4V6X|1|A5|C|1485
4V6X|1|A5|C|1486

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CL

60S ribosomal protein L13

Chain Ca

60S ribosomal protein L27a

Chain Ci

60S ribosomal protein L36