HL_4V6X_117
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- UGUAACAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6X_117 not in the Motif Atlas
- Homologous match to HL_8P9A_140
- Geometric discrepancy: 0.3204
- The information below is about HL_8P9A_140
- Detailed Annotation
- GNRA wlth tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_98423.3
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
4V6X|1|A5|U|2006
4V6X|1|A5|G|2007
4V6X|1|A5|U|2008
4V6X|1|A5|A|2009
4V6X|1|A5|A|2010
4V6X|1|A5|C|2011
4V6X|1|A5|A|2012
4V6X|1|A5|A|2013
Current chains
- Chain A5
- 28S ribosomal RNA
Nearby chains
- Chain Az
- Elongation factor 2
- Chain CK
- 60S ribosomal protein L12
- Chain Cm
- 60S ribosomal protein L40
- Chain Cq
- 60S acidic ribosomal protein P0
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