HL_4V6Y_087

3D structure

PDB id

4V6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4V6Y|1|BA|A|1952, 4V6Y|1|BA|U|1955

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Y_087 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.292

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4V6Y|1|BA|G|1949
4V6Y|1|BA|G|1950
4V6Y|1|BA|U|1951
4V6Y|1|BA|A|1952
4V6Y|1|BA|A|1953
4V6Y|1|BA|G|1954
4V6Y|1|BA|U|1955
4V6Y|1|BA|U|1956
4V6Y|1|BA|C|1957

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BK

50S ribosomal protein L11