HL_4V6Y_088

3D structure

PDB id

4V6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4V6Y|1|BA|A|2030, 4V6Y|1|BA|A|2031, 4V6Y|1|BA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Y_088 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.1946

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4V6Y|1|BA|G|2027
4V6Y|1|BA|U|2028
4V6Y|1|BA|G|2029
4V6Y|1|BA|A|2030
4V6Y|1|BA|A|2031
4V6Y|1|BA|G|2032
4V6Y|1|BA|A|2033
4V6Y|1|BA|U|2034
4V6Y|1|BA|G|2035
4V6Y|1|BA|C|2036

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L36