HL_4V6Y_097

3D structure

PDB id

4V6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

4V6Y|1|BA|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Y_097 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.3179

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V6Y|1|BA|U|2404
4V6Y|1|BA|G|2405
4V6Y|1|BA|A|2406
4V6Y|1|BA|A|2407
4V6Y|1|BA|U|2408
4V6Y|1|BA|G|2409
4V6Y|1|BA|G|2410
4V6Y|1|BA|A|2411
4V6Y|1|BA|A|2412
4V6Y|1|BA|G|2413

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L13