HL_4V6Z_004

3D structure

PDB id

4V6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

CAGCCUGG(H2U)AG

Length

11 nucleotides

Bulged bases

4V6Z|1|A3|G|19, 4V6Z|1|A3|G|20, 4V6Z|1|A3|A|22

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Z_004 not in the Motif Atlas

Homologous match to HL_3WQY_001

Geometric discrepancy: 0.1779

The information below is about HL_3WQY_001

Detailed Annotation

tRNA D-loop

Broad Annotation

tRNA D-loop

Motif group

HL_07951.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V6Z|1|A3|C|13
4V6Z|1|A3|A|14
4V6Z|1|A3|G|15
4V6Z|1|A3|C|16
4V6Z|1|A3|C|17
4V6Z|1|A3|U|18
4V6Z|1|A3|G|19
4V6Z|1|A3|G|20
4V6Z|1|A3|H2U|21
4V6Z|1|A3|A|22
4V6Z|1|A3|G|23

Current chains

Chain A3

tRNA-fMet

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BF

50S ribosomal protein L5