HL_4V6Z_067

3D structure

PDB id

4V6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Z_067 not in the Motif Atlas

Homologous match to HL_7A0S_029

Geometric discrepancy: 0.594

The information below is about HL_7A0S_029

Detailed Annotation

GNRA related

Broad Annotation

T-loop

Motif group

HL_91620.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V6Z|1|BA|C|1092
4V6Z|1|BA|G|1093
4V6Z|1|BA|U|1094
4V6Z|1|BA|A|1095
4V6Z|1|BA|A|1096
4V6Z|1|BA|U|1097
4V6Z|1|BA|A|1098
4V6Z|1|BA|G|1099

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BG

50S ribosomal protein L6

Chain BI

50S ribosomal protein L11