HL_4V6Z_099

3D structure

PDB id

4V6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

4V6Z|1|BA|G|2529

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Z_099 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1735

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

4V6Z|1|BA|U|2528
4V6Z|1|BA|G|2529
4V6Z|1|BA|A|2530
4V6Z|1|BA|A|2531
4V6Z|1|BA|G|2532
4V6Z|1|BA|U|2533
4V6Z|1|BA|A|2534
4V6Z|1|BA|G|2535

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BG

50S ribosomal protein L6