HL_4V70_004

3D structure

PDB id

4V70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

CAGCCUGG(H2U)AG

Length

11 nucleotides

Bulged bases

4V70|1|A3|C|16, 4V70|1|A3|C|17, 4V70|1|A3|U|18, 4V70|1|A3|G|19, 4V70|1|A3|G|20

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V70_004 not in the Motif Atlas

Homologous match to HL_6ORD_035

Geometric discrepancy: 0.3618

The information below is about HL_6ORD_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07951.1

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V70|1|A3|C|13
4V70|1|A3|A|14
4V70|1|A3|G|15
4V70|1|A3|C|16
4V70|1|A3|C|17
4V70|1|A3|U|18
4V70|1|A3|G|19
4V70|1|A3|G|20
4V70|1|A3|H2U|21
4V70|1|A3|A|22
4V70|1|A3|G|23

Current chains

Chain A3

tRNA-fMet

Nearby chains

Chain B5

50S ribosomal protein L1

Chain BA

Large subunit ribosomal RNA; LSU rRNA