HL_4V70_039

3D structure

PDB id

4V70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

4V70|1|BA|G|60, 4V70|1|BA|C|61

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V70_039 not in the Motif Atlas

Geometric match to HL_4GXY_003

Geometric discrepancy: 0.3429

The information below is about HL_4GXY_003

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_97725.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V70|1|BA|U|59
4V70|1|BA|G|60
4V70|1|BA|C|61
4V70|1|BA|U|62
4V70|1|BA|A|63
4V70|1|BA|A|64
4V70|1|BA|U|65
4V70|1|BA|C|66
4V70|1|BA|U|67
4V70|1|BA|G|68

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BT

50S ribosomal protein L23

Chain BY

50S ribosomal protein L29