HL_4V70_047

3D structure

PDB id

4V70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

4V70|1|BA|A|311

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V70_047 not in the Motif Atlas

Homologous match to HL_4WF9_010

Geometric discrepancy: 0.1804

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

22

Unit IDs

4V70|1|BA|C|305
4V70|1|BA|U|306
4V70|1|BA|G|307
4V70|1|BA|G|308
4V70|1|BA|A|309
4V70|1|BA|A|310
4V70|1|BA|A|311
4V70|1|BA|G|312

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BU

50S ribosomal protein L24